Nicole Washington
Nicole Washington
Some nodes might have the annotation property of deprecated. These should never be the assigned to be the cliqueLeader.
some nodes may be deprecated, and then replaced by other nodes. for example: http://www.ncbi.nlm.nih.gov/gene/100188109 a owl:NamedIndividual ; rdfs:label "LOC100188109" ; OBO:IAO_0100001 http://www.ncbi.nlm.nih.gov/gene/1957 ; owl:deprecated "true"^^xsd: . note that NCBIGene:1001888109 is...
i wanted to add tags for existing tickets that seemed to be missing. can you enable this git with those permissions?
I think "modulates" should be a synonym of the term "involved_in_or_regulates", [RO:0002431](http://purl.obolibrary.org/obo/RO_0002431)
I'm following your [readme](https://github.com/konradjk/exac_browser/blob/master/README.md), trying to fetch the reference data for the basic installation of this browser, and am having trouble getting the data from http://www.broadinstitute.org/~konradk/exac_browser/exac_browser.tar.gz I've been kicked off...
we will need to disambiguate between variants (and perhaps any geno partonomy) that are germline vs somatic. how should these be represented? should there be classes for "germline variant" "somatic...
We need some object and/or data properties for listing reference and alternate nucleotide (and/or amino acid) sequences. I could not find any other ontologies that have these. so to say...
At some point we'll need to consider a person's epigenetic factors related to disease susceptibility, etc. This could include methylation patterns, histone modifications, etc. Should this be another subclass of...
i have been pointed to the documentation for chromosomal rearrangements: http://onlinelibrary.wiley.com/doi/10.1002/0471142905.hga04cs17/pdf this has a lot of good information about karyotypes, and all the kinds of things that can happen. here's...
GENO currently only models the sex chromosome zygosity for mammals (with X and Y), but it should also accommodate the models for birds/reptiles which is Z and W. here's some...