Niklaus Johner

### Is your feature request related to a problem? Please describe I'm using `bbmap.sh` to filter out host reads (paired-end or not) from metagenomics data. What I'd actually want is...

This makes it easier to use ffq from python instead as from the command line, e.g.: ``` from ffq.main import parser, run_ffq args = parser.parse_args(["SRP373424"]) study_data = run_ffq(args) ```

When installing the latest bioconda release in a fresh environment, Python 3.12 will get installed and checkm will fail with the following error: ``` Traceback (most recent call last): File...