nirav572
nirav572
Hi @silviaadiz, There must be more to that error, can you share the complete error you get when running the script? Also, would it be possible to share a snapshot...
Hi @silviaadiz, I was unable to replicate the error, however, we have recently updated the scripts. Can you test again with the updated scripts, if the error persists, please email...
Any updates @silviaadiz?
The issue was resolved via email. The error was not caused by the imputed data, but rather by occasional unphased genotypes present in a file that appeared to contain phased...
Hi @weekend37 - I had a similar issue. The error message was: ``` Launching in training mode.... ... Training base models... 100%|███████████████████████████████████████▉| 546/547 [01:46
Hi Alex, Thank you for the suggestion. Can you please reach out to me at [email protected].
Hi Lucas, Thanks for the clarification. We don't have plans to extend the haplotype recovery scripts for FLARE beyond the current RFMIX setup at this time, but it’s something we...
Thanks for the suggestion, we'll add it to our list.
Hi @ryshi06 One possible reason is how the delimiter is being parsed for your sumstats file. In some cases, Tractor may output `NA`s (empty values) for certain columns. For example,...
Hi Ruyu, Thank you for reaching out! A couple of things to clarify/check: - Has your data already been QC’d, retaining only high-quality variants? - Is your local ancestry inference...