niradsp

Hello Chris, I am running the bonito basecaller. This is supposed to be GPU. The GPU I have is Tesla V100. Bonito was installed using pip. The basecaller was essentially...

Hello Chris, That seems to have worked! So this is something I need to export every time I run Bonito? The GPU RAM usage is 3.6G. The reads per second...

Thank you @cying111 for the response. I will try it as you suggested very soon, and if that does not work, I will try out the development branch. I don't...

Thank you for your help. I must say that this is a very well-designed program and finished running within 2 hours. I have been looking at a particular gene and...

Hello @cying111 , Thank you for the explanation. I downloaded the development version, and I ran it the way that you suggested. Are there any other tweaks I can make?...

Hi, Sorry for the late response . We are finally getting our data. The isoform in question is not novel. It is quite detectable via Illumina, and Flair found it...

Hello, Is the duplicate transcript ID bug the reason that some of the samples are showing abundance value as zero? Please see below: This is not a single-exon transcript. [1]...