PySurfer
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Cortical neuroimaging visualization in Python
Hi, I would like to display conjunction results in a similar manner as `plot_fmri_conjunction.py`. However, the example code `plot_fmri_conjunction.py` already fails to produce the image shown in the gallery. It...
======================= Generate Surface Labels ======================= Define a label that is centered on a specific vertex in the surface mesh. Plot that label and the focus that defines its center. Exception...
Hi: I have ran the code for "Plot RGBA values on brain surface", but the picture rendering seems wrong. It was different with the example result.  How could I...
I am using the latest version of pysurfer with python 3.10. The system is Fedora 37 with wayland and nvidia gbm. QSocketNotifier: Can only be used with threads started with...
Relevant code: https://github.com/nipy/PySurfer/blob/a5a019ec5c6d25cdef92aca84a5e1ce1f9ba6fef/surfer/utils.py#L179-L213 Hi, I was browsing through the code and I accidentally stumbled upon the function `_fast_cross_3d` referenced in the URL above. I don't think that this implementation is...
Hi. When I drew brain of split view for lateral and medial views, the horizontal spacing is pretty large after save the image. Is there any method to reduce it?...
Hello, I am trying to plot sEEG electrodes of multiple participants on the same head, and I am using headmodel from freesurfer and RAS locations of the electrodes. When I...
Is there are way to change the colorbar settings. For example, can we make the colorbar vertical instead of horizontal and/or can we change the size of the colorbar and...
Similarly to #286, there is a render bug when adding atlas annotations on some chipsets. The solution is the same: set the `force_opaque=True` flag on the surface actor. Despite its...
We really would like to use PySurfer, but encountered many issues while installing and use the tool due to libraries and versions, dependencies inconsistency. Can the team help create a...