nibabies
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nipreps
Processing tools for magnetic resonance images of infant brains
The goal of this PR is mirror workflow changes in fMRIPrep, splitting the processing into "fit" and "apply" modes. This is still a work-in-progress. New features: - `--level {minimal, resampling,...
Bumps [jinja2](https://github.com/pallets/jinja) from 3.0.1 to 3.1.4. Release notes Sourced from jinja2's releases. 3.1.4 This is the Jinja 3.1.4 security release, which fixes security issues and bugs but does not otherwise...
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Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.65.0 to 4.66.3. Release notes Sourced from tqdm's releases. tqdm v4.66.3 stable cli: eval safety (fixes CVE-2024-34062, GHSA-g7vv-2v7x-gj9p) tqdm v4.66.2 stable pandas: add DataFrame.progress_map (#1549) notebook: fix...
Bumps [idna](https://github.com/kjd/idna) from 3.4 to 3.7. Release notes Sourced from idna's releases. v3.7 What's Changed Fix issue where specially crafted inputs to encode() could take exceptionally long amount of time...
### What happened? Am only getting MNI space func ouputs, not cifti. I would expect both to be output such as in fmriprep. (I do get anat cifti outputs). When...
### A short summary of what you would like to see in *NiBabies*. Scale brain size flag based off of the age of the participant. Will need to find or...
### What happened? Looking through the `infant_recon_all` log, this line pops up a few times. ``` mris_sphere supposed to be reproducible but seed not set ``` ### What command did...
Address #251 - My preference remains only outputting the CIFTI, and allowing users to derive this with `wb_command -cifti-separate COLUMN -volume-all ` - This will increase output size, as another...
The `recon-all` workflow uses the tissue segmentations, not an aseg, for brainmask refinement.
Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.0.1 to 10.3.0. Release notes Sourced from pillow's releases. 10.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/10.3.0.html Changes CVE-2024-28219: Use strncpy to avoid buffer overflow #7928 [@hugovk] Use functools.lru_cache for hopper() #7912 [@hugovk]...