Nick Negretti

Results 23 comments of Nick Negretti

I'll push a 0.4.0 of `readlif` this weekend (next day or two) - finishing up a few big projects today!

@JacksonMaxfield `reaflif` 0.4.0 with mosaic support is up on pypi! As far as I can tell, it works as expected. There are no image stitching utilities, but data access works.

Thanks for the bug report! No issue on your end, but I think this is a result of the file being organized differently than expected. I'm wondering if this is...

To add, if you need to work on your data quickly, the [python-bioformats](https://pythonhosted.org/python-bioformats/) package should be feature complete. Although the memory and install requirements are greater.

Interesting! I haven't seen a .lif file from an RGB camera before. All of the file-reading assumptions are for single-channel images. Unfortunately, there isn't a public LIF specification so most...

An example with additional dimensions would be great! I'll see if I can find information on what 6-8 are used for. I've been unsuccessful finding much documentation about the format,...

Thanks for the clarification. It makes sense that the data in the file might be organized in the same order of the dimensions listed above. The confusing thing is where...

Thanks for taking the time to provide the detailed feedback and information. I've thought about this for a bit and I think I know how to begin to approach this...

I haven't forgotten about this! I have a working example up in the dev branch. This branch isn't current with main, it's based on 0.4.1. Instead of calling the function...

> If you end up changing it, maybe something like get_slice or get_arbitrary_slice? I suppose it depends on who you ask, but to me the word frame implies something recorded...