Nils Eling

The `imager::display` function could be a potential solution

I introduced a few more fixes: 1. when the assay changed, the first gate was not erased (now fixed) 2. There was a strange bug that when the first marker...

Bzw, the build issues on devel seem to be slang related; see Bioc developers forum slack

I discussed this with @lassedochreden. Not a huge issue since we can always use ubuntu systems - just so that you know that there are tensorflow/mac issues.

Hi @asom Have a look at #132 for how to change the mask bit encoding. @Milad4849 could you please document this somewhere visible? Let's leave this issue open until it's...

This can be addressed together with #191

Did you check if updating to 1.4.0 fixes the issue?

Hi @Jonas, how should we proceed with this PR?

So steinbock is using the old pipeline where the probability masks were first segmented and then the detected objects were downscaled. This leads to issues that cells are lost if...

Hmm, I can't reproduce this issue anymore. For the test data the cell IDs seem to be continous with the current pipeline. But I remember that there was an issue...