nikostr

Hey, I'm interested in this feature :) is a PR coming? :)

This is probably caused by the axis scales being of different lengths. Afaik, ggplot has no way of explicitly setting facet scales (e.g. https://github.com/tidyverse/ggplot2/issues/187 and https://github.com/tidyverse/ggplot2/pull/2747). There are blog posts...

Possibly less hacky could be to abandon `facet_wrap` and use something like [patchwork](https://github.com/thomasp85/patchwork) instead. That would mean doing the range splitting ourselves, but the tidyverse `cut_width` function is really good...

Hey! I've tried my hand at setting up a [DeepVariant-GLnexus workflow](https://github.com/nikostr/dna-seq-deepvariant-glnexus-variant-calling). Would love to have it as a part of this repo. It has unit and integration tests. Genome fetching,...

> For those of you who are interested in reading VCF/BCF into pyranges, what is your use-case? Just trying to understand the problem better. For me the main use cases...

Would it make sense to replace the miniconda3 container with the snakemake one as well? The miniconda3 container does not support mamba. EDIT: My bad, it seems the snakemake image...

Hey, there were some minor issues with the implementation by @vincent341 linked above. In case anyone else finds this interesting, I've submitted a [pull request](https://github.com/vincent341/LayerNormLSTM/pull/1) to amend that implementation. This...

I also looked for some info on this, and found the following at https://github.com/tlemane/kmtricks/wiki/IOs-API#1a-stream-it-1 ``` std::vector counts(reader.infos().nb_counts); // count order follows the sample order in the input fof ``` When...

Have you made any additional progress, @marrip ?:)

My workaround was basing my action on the conda action and working from there: https://github.com/nikostr/dna-seq-deepvariant-glnexus-variant-calling/blob/main/.github/workflows/python-package-conda.yml So, instead of relying on the snakemake docker image, I set up an environment in...