Nico Trummer
Nico Trummer
Hey, this is actually outdated, #8767 is the current version. A lot of additional `task.ext` fields are used here, and the other PR fixes this. I am just waiting on...
> @nictru, why are `htodemux` changes also included here? This was because the branch in your fork was not up-to-date with the main branch of the nf-core repo - as...
@LuisHeinzlmeier your `No such file or directory` is because URLs can only ever point to files, never to directories. While nextflow can handle directories as inputs, it cannot resolve them...
For testing purposes I increased the memory limit for all processes from 4GB to 6GB. It seems to work now, so this means that running the BFF tests in docker...
@ZabalaAitor, could you check if this solves your problem?
I am already working on this as someone else has pointed this out before. You can keep track of it via #157
@ZabalaAitor, the issue you mentioned in your previous message should be fixed now, could you try again?
I think this is outdated
All nf-core pipelines I know of that use a reference genome use the following setup: - Parameters `fasta` and `gtf` for the reference genome FASTA and GTF files. Values provided...
I will add a few more notes on how to implement this neatly in #78, as I can comment the code there