Nico Trummer

icon company TUM, Data Science in Systems Biology icon location Munich

Results 45 comments of Nico Trummer

STAR, CIRIquant, DCC errors during pipeline run

# STAR I encountered this problem before, but had no time to fix it yet. The problem is that the iGenomes STAR index is not compatible with the STAR version...

STAR, CIRIquant, DCC errors during pipeline run

Hey, @dmgie, could you maybe check if your errors do still occur with the latest version of the pipeline? There were some PRs fixed in the meantime and I am...

STAR, CIRIquant, DCC errors during pipeline run

Hey, no problem - I will close the issue in this case, feel free to open a new one if you encounter new problems some time in the future :)

Release Preparation Checklist

I think all these tasks have been done. Can we close this issue?

Error in predLoess(object$y, object$x, newx = if (is.null(newdata)) object$x else if (is.data.frame(newdata)) as.matrix(model.frame(delete.response(terms(object)), : NA/NaN/Inf in foreign function call (arg 5)

Incrementally increasing the `span` parameter solved it for me

new module: bff

We will soon bring this back to live in a dedicated nf-core/hadge hackathon

new module: demuxem

We will soon bring this back to live in a dedicated nf-core/hadge hackathon

new module: seurat/htodemux

We will soon bring this back to live in a dedicated nf-core/hadge hackathon

ERROR ~ Invalid method invocation `call` with arguments using DCC

I am currently travelling and will only be able to look into this early next week

ERROR ~ Invalid method invocation `call` with arguments using DCC

I think this is outdated, let me know if it still occurs