nicorap

we have a few modules ready from the danish national genome center, I'll just a add them and make the missing ones also with a sub workflow.

That makes sense, and also explain why I never got to have sentieon running using 2.7.2 from bam. 😐. I think it’s important to be able to skip BQSR, as...

So we have at DNGC quite a thorough analysis plan for Germline testing of pipelines. It’s even been implemented in dsl2. I think we can definitely share word and git...

Hehe Good to see that @lassefolkersen is on it. This is work we started at DNGC. But just to confirm, we use Happy on a variety of regions. We also...

It looks like there’s lots of thing going on here. Maybe we should have a call all of us soon to align, for example, when we run validation of a...

> > Thanks @johanneskoester! Yes exactly, in that benchmark I included `Sarek 2.7` with variant callers `Strelka2`, `HaplotypeCaller` and `Freebayes`, as only germline variant calls are benchmarked. The purpose of...