nicolo-tellini

customized output for samtools coverage specifying the columns of interest

1

Hello, I was wondering whether it is possible to add the customization of the output in `samtools coverage`. While `rname`, `startpos` and `endpos` are indispensable to figuring out the output,...

NONREF_NONPOLY and population_summary.txt empty

2

Hello I run your tool and I find it really useful nevertheless there are some outcomes that I do not completely understand. One is about NONREF_NONPOLY under the column class...

--- POST UPDATE--- Last update: 18/08/2022 --- END --- The operations below are the results of hard debugging on the OS: ``` Linux Ubuntu 18.04.5 LTS 5.4.0-122-generic #138~18.04.1-Ubuntu SMP x86_64...

logs and err - for the installer

1

Hello JX, the installer runs several software. what about redirecting _logs_ and _errors_ output inside software-named _txt_ and storing them inside an appropriate folder? For example what if the main...

Hi Jx, It is me, again. Since the pipeline requires the installation of a lot of packages, what about creating a virtual env. ? What about containers? Docker (https://www.docker.com/) and...

Dear, I am wondering if megahit can assemble metagenome sequenced with single-end Illumina reads only. Thank nic

Hello, I am running _kraken2_ across illumina paired-end fastqs. My fastqs have 9 millions each. In the _kraken2_ report, I get 9 millions _Number of raw reads_, while I expect...