Nicole Vasilevsky

This PR adds synonyms and definitions to Mondo terms that already exist, per Mattias and Christina's recommendation. Spreadsheet is [here](https://docs.google.com/spreadsheets/d/1Sz47Dk5TZvUh4xMEd6GqfHNqQcmI6BgW/edit#gid=1826738152). This is PR #1 out of 3. This is the...

Note: one term was added as a synonym for an existing term: Immunodeficiency, autosomal recessive due to ZNFX1 deficiency, I believe is equivalent to OMIM:619644 close #5261

Add a batch of new lung terms for Mattias and Christina. PR #2 of 3. ROBOT template is [here](https://docs.google.com/spreadsheets/d/1Sz47Dk5TZvUh4xMEd6GqfHNqQcmI6BgW/edit#gid=60981685). address #5261

[NTR] New lung terms - from Mattias and Christina

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Peter and I met with pulmonary experts Mattias and Christina. We'll add new lung terms from this [spreadsheet](https://docs.google.com/spreadsheets/d/1Sz47Dk5TZvUh4xMEd6GqfHNqQcmI6BgW/edit#gid=361015257). Related to #3026 cc @pnrobinson

[NTR] toxic bronchiolitis

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**Preferred term label:** toxic bronchiolitis **Definition (free text, please give PubMed ID, if applicable, in format PMID:#######)** Bronchiolitis as a response to a toxic exposure. **Parent term (use [OLS](https://www.ebi.ac.uk/ols/ontologies/mondo), or...

MONDO:0015265 'bronchiolitis obliterans with obstructive pulmonary disease'

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The definition does not match the label. Bronchiolitis obliterans syndrome (BOS) is a lung disorder that is mainly associated with chronic allograft dysfunction after lung transplantation and that is characterized...

review ORDO grouping classes

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Consider obsoleting Orphanet grouping classes based on Mondo [Exclusion reasons](https://mondo.readthedocs.io/en/latest/editors-guide/exclusion-reasons/#description). See [spreadsheet](https://docs.google.com/spreadsheets/d/1Ol366G24v4NCpSJUf_vDtvrLnASHHPxp9_neMSr8_2U/edit#gid=264500223).

[Merge] MONDO:0004033 familial ovarian carcinoma

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**Mondo term (ID and Label)** MONDO:0004033 | familial ovarian carcinoma **Reason for deprecation** duplicate **Term to be merged with** MONDO:0016248 familial ovarian cancer

check HPO OMIM omit list and consider obsoleting omitted terms from Mondo

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https://github.com/monarch-initiative/hpo-annotation-data/blob/master/rare-diseases/annotated/omit-list.txt

Check for deprecated classes in xrefs?

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Related to #2068 Sometimes the classes we xref have been obsoleted and/or replaced, and we currently don't have a mechanism to check for this and ensure it is up to...