Nicole Ruiz

I have added SO:0002171 telomeric_D_loop as a child of origin_of_replication. The definition is "A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric...

SnpEff uses SO terms non_coding_transcript_variant and non_coding_transcript_exon_variant (non_coding_exon_variant). Mappings for these terms need to be added to SO.

All other SO terms used by SnpEff need to be added as mappings.

One possible solution would be to create a generic GFF source term and then have different relationships that capture if the sequence_feature was predicted by a specific tool or if...