nickloman

All good suggestions. Personally I don't mind that all the files are output to the screen. Regarding point 2) I probably don't see this because my file systems are mounted...

Just try poretools fastq --group 001 workspace/pass

Try the very latest HEAD release (i.e. download from Github).

These may be 2D reads, in which case you are getting template strands, as well as complement and 2D reads. If you just want 2D add --type 2D and if...

Can you check with latest poretools installed from this repo?

Use --group 1

This is great, thank you for the suggestion. @arq5x what do you think?

Well I think between us we've managed to keep up with the various changes required for new Metrichor (recursive folder operation) and the new MinKNOW 1.4 file format, but we...

Likely you need to basecall the reads first with Albacore, Metrichor etc.

I will put some up, probably a full run will need to be hosted outside this repo though, as the files are quite large.