Nils Homer

We'll need to use a token username/password, see: https://central.sonatype.org/news/20240617_migration_of_accounts/

Linter false positive for `should_use_compilers`?

1

See: https://github.com/bioconda/bioconda-recipes/actions/runs/13865436312/job/38803429081. Job log is here: [job-logs.txt](https://github.com/user-attachments/files/19255005/job-logs.txt). I copied the [`meta.yaml`](https://github.com/bioconda/bioconda-recipes/blob/6144f7b3397dac92a72036fe4981add6a50c6bef/recipes/fqgrep/meta.yaml) here: ```yaml {% set version = "1.1.0" %} package: name: fqgrep version: {{ version }} build: number: 0 run_exports:...

I have a list of files (from `grep`) that I'd like to pipe into `eza -T` (with `xargs`) and have displayed as a tree. I suppose I could use a...

This speeds up fqtk ~10% in my hands.

See: https://github.com/fulcrumgenomics/fgbio/issues/1011

fix: always restore stderr, even with an exception

5

This was causing exceptions not to be printed to stderr. The following would print nothing: ```console >>> from fgpyo.io import suppress_stderr >>> with suppress_stderr(): ... pysam.AlignmentFile("/does/not/exist.bam") ... ```

See: https://github.com/fulcrumgenomics/fgpyo/pull/223/files#r1970206805