microhaplot

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Error in read.table(summary.path, stringsAsFactors = FALSE, sep = "\t") : no lines available in input

1

Not sure it's an issue, I am trying to use the `PrepHaplotFiles()` command and when Hapture.pl starts, I get an error `Error in read.table(summary.path, stringsAsFactors = FALSE, sep = "\t")...

ltalignani

Hi Thomas! I hope you are doing well. Thanks for creating this great packages. I wanted to alert you to an issue with the SNP report, where some loci get...

LZarri

Greetings! I was wondering how microhaplot handles reads (or read pairs) that do not span all SNPs defined for a marker/amplicon in the VCF file.

standage