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Published 20 hours ago • verified publisher icon ngs-fzb
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MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis comp...

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rmdup has been superseded by markdup

see https://github.com/samtools/samtools/releases/tag/1.6

tseemann avatar tseemann

is it possible to change the location of /tmp directory?

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Hi, I would like to know - is there a way to change the location of the /tmp directory in the following command or any other way? MTBseq --step TBfull...

ReemaSingh avatar ReemaSingh

same mutation multiple times

1 comment

Hello Developers, I have run the MTBseq pipeline for my 6000 TB samples. I noticed that some mutations are repeated in the same .tab file. I don't understand why is...

pratibha-kadam avatar pratibha-kadam

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MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis comp...

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