Noah F. Greenwald

There's indeed a post-processing step that operates across the entire image. I'm guessing for something this large, it will make more sense to generate segmentation predictions on large patches (say...

Absolutely, feel free to open a separate detailing the requirements and what an ideal interface would look like. No promises on having something immediately ready. In the meantime, something like...

Yes, although with 10k x 10k crops, the number of cells at the border would quite a small overall percentage of the image, might be fine to just leave them...

Yes, you can pass kwarg to the function to control whether normalization happens or not, see [here](https://github.com/vanvalenlab/deepcell-tf/blob/5f61904e223c873a84af8bbbed83ecd75b6b64d9/deepcell/applications/mesmer.py#L49). However, I would verify that you see a decrease in performance before substituting...

Hey @jayluo2, are you running the code locally within a docker or in a virtual environment?

Got it. We've found that different tensorflow versions can interact in unpredictable ways local machines/trained models. Can you try running it from within the docker to confirm? The instructions are...

Hmm, maybe @tddough98 can weigh in?

Hey Nofar, We updated the model last night with additional changes. Can you try re-running again to see if that solved the issue?

Can you post a couple images of both versions? I did a pretty thorough comparison and thought the new version in aggregate was better. There's currently not a way to...

Hey @willgraf, I just pushed the channel_shift branch that exposes the default channel_shift_range augmentation parameter, as well as creates a new independent_channel_shift_range. However, it requires more arguments to the train...