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Template workflow run fails for nf-core tools basic training

Open carlga opened this issue 1 year ago • 0 comments

Describe the bug Test run of template workflow fails at multiqc step in Gitpod environment. Failing with nf-core/tools v2.13.1 but appears to work for v2.10.

To Reproduce Steps to reproduce the behavior:

  1. Go to demo Gitpod environment 'https://www.gitpod.io/#https://github.com/nf-core/basic_training'
  2. Create workflow from template 'nf-core create'
  3. Run template pipeline 'nextflow run nf-core-demotest/ -profile test,docker --outdir test_results'
  4. See error [0d/ca2378] process > NFCORE_DEMOTEST:DEMOTEST:FASTQC (SAMPLE3_SE) [100%] 3 of 3 ✔ [64/bbfe5f] process > NFCORE_DEMOTEST:DEMOTEST:MULTIQC [100%] 1 of 1, failed: 1 ✘

Expected behavior [57/dcefc0] process > NFCORE_DEMOTEST:DEMOTEST:FAST... [100%] 3 of 3 ✔ [84/73e014] process > NFCORE_DEMOTEST:DEMOTEST:MULTIQC [100%] 1 of 1 ✔

carlga avatar Mar 18 '24 15:03 carlga