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verified publisher icon nf-core

Update test data for nf-test/summary_report

Open alyssa-ab opened this issue 3 years ago • 2 comments

Description of feature

https://github.com/nf-core/viralintegration/blob/summaryreport/tests/modules/summary_report/main.nf.test https://github.com/nf-core/test-datasets/tree/viralintegration/testdata/summary_report

Use inputs from updated runs with full reference

  • [x] Nextflow full GRCh38
  • [ ] CTAT/Cromwell full GRCh38

alyssa-ab avatar Nov 16 '22 20:11 alyssa-ab

For CTAT/Cromwell run, use Docker container (v1.4.0) which was updated with the latest release 4 months ago

  • Singularity version run initially was v1.01

alyssa-ab avatar Nov 17 '22 18:11 alyssa-ab

Nextflow inputs added: https://github.com/nf-core/viralintegration/pull/38

alyssa-ab avatar Nov 21 '22 18:11 alyssa-ab