nf-core modules install command hanging
Description of the bug
Having issues installing modules from nf-core
Command used:
nf-core modules install busco/busco
output:
,--./,-.
___ __ __ __ ___ /,-._.--~\
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/tools version 3.5.0 - https://nf-co.re
There is a new version of nf-core/tools available! (3.5.1)
INFO The 'modules.json' file is not up to date. Recreating the 'modules.json'
file.
^C
Aborted.
Hangs at this stage for hours. No modules.json file created. Tried it in a different folder and works file. Made minor changes to downloaded modules, patch command behaving the same way.
Any help is appreciated, thank you!
Please feel free to relabel issue.
Command used and terminal output
nf-core modules install busco/busco
System information
Linux, Ubuntu 22.04.5 nf-core version: 3.5.0 Nextflow version: 25.10.2 Executor: slurm nf-core/tools
can you try with the current dev version (`pip install --upgrade --force-reinstall git+https://github.com/nf-core/tools.git@dev)?
Hello, I'm sorry I forgot to update the issue, my modules.json was not getting created, cleaning cache and reinstalling modules using slurm worked. I am using pixi to create the environment and run nf-core, its still a bit slow, what would be the pixi alternative to the command you provided?
Thank you for the reply and the tool!