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Bad check on pipelines `modules.json`

Open AlexVCaron opened this issue 1 month ago • 0 comments

I removed the multiqc module from nf-core from my pipeline to install my own for development purposes. Now, I get this error for no valid reason :

Image

The error disappear once I reinstall the multiqc module from nf-core.

I believe this behavior from the lint test is not the one expected, nor wanted. It is caused by this line in the modules.json lint test, that checks that all repositories listed install modules, which is now not the case for my nf-core after uninstalling multiqc (only subworkflows). I also don't think it's a requirement that makes sense to be enforced.

I'll try to propose a quick PR to fix this if I end up having some time.

AlexVCaron avatar Dec 01 '25 16:12 AlexVCaron