source for oncoanalyser test data ?

[aeozdemr]

Hi,

I just want to know where this data comes from, any info for that ?

[jfy133]

This would be a good question for someone like @rayanhassaine or @scwatts !

It should be documented, here: https://github.com/nf-core/test-datasets/tree/oncoanalyser

But I don't see anything currently. Maybe it can be updated?

[scwatts]

I generated this test data by manually simulating a minimal set of reads needed to produce somewhat sensible results quickly when analysed by oncoanalyser. This was done with a combination of Python / SAMtools / wgsim, and includes germline predisposition small variants, somatic driver small variants, somatic structural variants + gene fusions, somatic viral integration