test-datasets icon indicating copy to clipboard operation
test-datasets copied to clipboard

CAT - Contig Annotation Tool custom database

Open maxibor opened this issue 1 year ago • 1 comments

As CAT database is quite large, a custom one would be needed to test nf pipelines/wf.

This is apparently feasible to generate a small enought database for CI purposes https://github.com/dutilh/CAT/issues/65, and would already be needed for https://github.com/nf-core/mag/issues/501

maxibor avatar Feb 16 '24 14:02 maxibor

For future reference: here is a very small db using pdb accession

cat_custom_db.tar.gz

maxibor avatar Feb 16 '24 14:02 maxibor