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verified publisher icon nf-core

WIP PR for Release 2.4.0

Open apeltzer opened this issue 1 year ago • 1 comments

PR checklist

  • [ ] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • [ ] If necessary, also make a PR on the nf-core/smrnaseq branch on the nf-core/test-datasets repository.
  • [ ] Make sure your code lints (nf-core lint).
  • [ ] Ensure the test suite passes (nf-test test main.nf.test -profile test,docker).
  • [ ] Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • [ ] Usage Documentation in docs/usage.md is updated.
  • [ ] Output Documentation in docs/output.md is updated.
  • [ ] CHANGELOG.md is updated.
  • [ ] README.md is updated (including new tool citations and authors/contributors).

apeltzer avatar Sep 26 '24 12:09 apeltzer

nf-core pipelines lint overall result: Passed :white_check_mark: :warning:

Posted for pipeline commit 3876a7a

+| ✅ 246 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   1 tests had warnings |!

:heavy_exclamation_mark: Test warnings:

:grey_question: Tests ignored:

  • nextflow_config - Config default ignored: params.fastp_known_mirna_adapters

:white_check_mark: Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-10-14 09:57:15

github-actions[bot] avatar Sep 26 '24 13:09 github-actions[bot]

Most of the points added for another release / extra issues created - if @atrigila @nschcolnicov have some minutes maybe we can try tackling the points already here within this one :)

apeltzer avatar Oct 08 '24 06:10 apeltzer