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Published 20 hours ago • verified publisher icon nf-core

Automatic conversion to h5ad/seurat files after alignment.

Open alexblaessle opened this issue 3 years ago • 2 comments
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Is your feature request related to a problem? Please describe

h5ad/seurat are becoming default file formats for scRNAseq. It would be nice if the pipeline outputs one of the two or even both.

Describe the solution you'd like

Output to h5ad and seurat (could be controllable via a flag.)

alexblaessle avatar Jan 24 '22 12:01 alexblaessle

There's already an issue for h5ad: #68 Will address that soon!

grst avatar Jan 26 '22 13:01 grst

Would like this too!

nh13 avatar Mar 11 '22 23:03 nh13

Addressed in the to-be-released 2.1.0 release now 👍🏻

apeltzer avatar Oct 06 '22 08:10 apeltzer