Matrix conversions should provide gene annotations

Open ogibson opened this issue 3 years ago • 1 comments

Description of feature

All the mtx_conversions that are being generated by the pipeline are output without the annotations for the features, providing only the Ensembl ids and not the symbols. Except in the case of Alevin it should be pretty straightforward to export the annotations (if available) in the mtx conversions.

Any thoughts on this?

Oct 11 '22 13:10 ogibson

at least in the anndata and seurat objects we should definitely have them. Shouldn't be to complicated to get them from the GTF file?

Oct 11 '22 14:10 grst

Done in #160.

It currently doesn't work in alevin-fry, but there's a follow-up issue for that #184

Nov 17 '22 15:11 grst