/etc/resolv.conf doesn't exist in container

[luciazifcakova]

Description of the bug

Workflow execution completed unsuccessfully! The exit status of the task that caused the workflow execution to fail was: 140.

The full error message was:

Error executing process > 'NFCORE_RNASEQ:RNASEQ:RSEQC:RSEQC_READDUPLICATION (brain_2)'

Caused by: Process NFCORE_RNASEQ:RNASEQ:RSEQC:RSEQC_READDUPLICATION (brain_2) terminated with an error exit status (140)

Command executed:

read_duplication.py
-i brain_2.markdup.sorted.bam
-o brain_2 \

cat <<-END_VERSIONS > versions.yml "NFCORE_RNASEQ:RNASEQ:RSEQC:RSEQC_READDUPLICATION": rseqc: $(read_duplication.py --version | sed -e "s/read_duplication.py //g") END_VERSIONS

Command exit status: 140

Command output: (empty)

Command error: [33mWARNING:[0m Skipping mount /apps/free81/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container

Command used and terminal output

nextflow run nf-core/rnaseq -r 3.8.1 -name s3 -profile oist -work-dir ./work_rnaseq -resume -params-file nf-params.json

Relevant files

No response

System information

Linux deigo-login4.oist.jp 4.18.0-348.2.1.el8_5.x86_64 #1 SMP Tue Nov 16 14:42:35 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux singularity/3.5.2 Nextflow/21.10.6 slurm nf-core/2.4.1