Error Message: One or more container images specified are invalid

[RamiyapriyaS-Deloitte]

Description of the bug

I'm trying to run the pipeline with Docker on an Azure VM. The run fails with an error message indicating that the ubuntu:20.04 container cannot be run. The same container works fine on AWS and other Azure environments.

Error message: One or more container images specified are invalid

Command used and terminal output

Error executing process > 'NFCORE_RNASEQ:RNASEQ:PREPARE_GENOME:GUNZIP_GTF (genes.gtf.gz)'

Caused by:
  One or more container images specified are invalid

Command executed:

  gunzip \
      -f \
       \
      genes.gtf.gz
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_RNASEQ:RNASEQ:PREPARE_GENOME:GUNZIP_GTF":
      gunzip: $(echo $(gunzip --version 2>&1) | sed 's/^.*(gzip) //; s/ Copyright.*$//')
  END_VERSIONS

### Relevant files

_No response_

### System information

Nextflow version: 23.2.1-BETA1_2fe9694
Executor: Azure Batch 
Container: Docker 

[txellext]

Hi! I am getting the same error. Did you solve it?

[adamrtalbot]

Hi could you provide more info please? Which version of nf-core/rnaseq are you using? What is the base image for your Azure VM?

I'm unfamiliar with Nextflow version 23.2.1-BETA1_2fe9694, could you please clarify which version of Nextflow you are using from the releases page?

[drpatelh]

Will close this for now as we are awaiting further information. Please feel free to re-open if and when you can provide more details. Please feel to join the #rnaseq channel in the nf-core Slack Workspace for more real-time help. Thanks!