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Mis-labelled sequence coverage plot in comparison report

Open tlitfin-unsw opened this issue 9 months ago • 0 comments

Description of the bug

When running multiple pipelines, the comparison report displays sequence coverage plots to vizualize the MSA for each of the methods. ESMfold does not produce an MSA but the comparison report can mislabel another sequence coverage plot as if it was produced by ESMfold.

I suspect that the issue is related to this line.

Command used and terminal output

nextflow run ./proteinfold \
      --input samplesheet.csv \
      --outdir ./test-out/ \
      --mode colabfold,esmfold \
      --colabfold_server webserver \
      --colabfold_db /path/to/colabfold_db/ \
      --num_recycles_colabfold 3 \
      --use_gpu True \
      --colabfold_model_preset "alphafold2_ptm" \
      --esmfold_db /path/to/esmfold_weights/ \
      --esmfold_model_preset monomer \
      -profile apptainer \
      -c myconfig.config

Relevant files

No response

System information

No response

tlitfin-unsw avatar Mar 26 '25 00:03 tlitfin-unsw