Add Boltz Pipeline to nf-core/proteinfold

To-do:

[ ] Pass output through to report generator (need to troubleshoot this)
[ ] Fix download scripts (aria2c gets redirected and downloads a file with a different filename)
[ ] Improve variable names in schema and DB configs
[ ] Add tests
[ ] Update container links to use remote hosts when available

PR checklist

[x] This comment contains a description of changes (with reason).
[ ] If you've fixed a bug or added code that should be tested, add tests!
[x] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
[ ] If necessary, also make a PR on the nf-core/proteinfold branch on the nf-core/test-datasets repository.
[ ] Make sure your code lints (nf-core lint).
[ ] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
[ ] Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
[ ] Usage Documentation in docs/usage.md is updated.
[ ] Output Documentation in docs/output.md is updated.
[x] CHANGELOG.md is updated.
[ ] README.md is updated (including new tool citations and authors/contributors).

Dec 06 '24 01:12 nbtm-sh

[!WARNING] Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2. Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

Jan 21 '25 01:01 nf-core-bot

As discussed with @ziadbkh we closed this PR in favour of #230 The necessary code has been taken from this PR and incorporated there.

May 13 '25 11:05 JoseEspinosa