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bump vcf2maf to ensembl-vep=113.4 and update containers

Open JustinBellavance opened this issue 1 month ago • 2 comments

Bump ensembl-vep to 113.4 and change references to new seqera containers for vcf2maf.

PR checklist

Closes #XXX

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JustinBellavance avatar Dec 06 '25 17:12 JustinBellavance

Please use https links for the singularity container https://nf-co.re/docs/tutorials/nf-core_components/using_seqera_containers

mashehu avatar Dec 06 '25 18:12 mashehu

Please use https links for the singularity container https://nf-co.re/docs/tutorials/nf-core_components/using_seqera_containers

Didn't see that. Thanks for pointing me in the right direction.

JustinBellavance avatar Dec 06 '25 18:12 JustinBellavance