modules
modules copied to clipboard
[FEATURE] cellranger multi: leverage new reference-free VDJ option
Is your feature request related to a problem? Please describe
As of cellranger 10.0.0, VDJ analysis can be run reference free.
- https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/inputs/cr-multi-config-csv-opts#vdj
- Release notes
This functionality should be exposed in the cellranger multi module.
Describe the solution you'd like
We should parse this option from the meta_vdj input and modify the config file appropriately. We should also include the VDJ section in the config file if no reference is provided as long as this denovo flag is set and it's not a multiplexed experiment.
Describe alternatives you've considered
No response
Additional context
No response