modules icon indicating copy to clipboard operation
modules copied to clipboard

update module: vcf2zarr/convert

Open camlloyd opened this issue 2 months ago • 2 comments

PR checklist

Closes #9268 by adding index file to tests

  • [x] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR.
  • [ ] Remove all TODO statements.
  • [ ] Emit the versions.yml file.
  • [ ] Follow the naming conventions.
  • [ ] Follow the parameters requirements.
  • [ ] Follow the input/output options guidelines.
  • [ ] Add a resource label
  • [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [x] nf-core modules test <MODULE> --profile docker
      • [ ] nf-core modules test <MODULE> --profile singularity
      • [ ] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

camlloyd avatar Oct 28 '25 10:10 camlloyd

Um, the module doesn't take the index?

SPPearce avatar Oct 28 '25 20:10 SPPearce

@camlloyd , do you need to update the module to take the index too?

SPPearce avatar Nov 04 '25 10:11 SPPearce