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Add fusionreport detect and download with test.

Open rachwalp opened this issue 9 months ago • 1 comments

PR checklist

Closes #XXX

  • [ ] This comment contains a description of changes (with reason).
  • [] If you've fixed a bug or added code that should be tested, add tests!
  • [x] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR.
  • [ ] Remove all TODO statements.
  • [ ] Emit the versions.yml file.
  • [x] Follow the naming conventions.
  • [x] Follow the parameters requirements.
  • [x] Follow the input/output options guidelines.
  • [x] Add a resource label
  • [x] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [x] nf-core modules test <MODULE> --profile docker
      • [ ] nf-core modules test <MODULE> --profile singularity
      • [ ] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

rachwalp avatar Mar 25 '25 11:03 rachwalp

Hi @rachwalp are you going to continue working on this PR? If not, I’d be happy to pick it up and continue the migration😊

delfiterradas avatar Jun 26 '25 20:06 delfiterradas

This PR has been tagged as awaiting-changes or awaiting-feedback by an @nf-core/modules contributor. Remove stale label or add a comment if it is still useful.

github-actions[bot] avatar Aug 03 '25 00:08 github-actions[bot]

Closed with https://github.com/nf-core/modules/pull/8725 and https://github.com/nf-core/modules/pull/8735

delfiterradas avatar Aug 04 '25 13:08 delfiterradas