modules icon indicating copy to clipboard operation
modules copied to clipboard

Unify busco configs

Open mahesh-panchal opened this issue 9 months ago • 1 comments

PR checklist

Unifies busco configs to follow nf-core guidelines: https://nf-co.re/docs/guidelines/components/modules#configuration-of-extargs-in-tests

  • [x] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR.
  • [ ] Remove all TODO statements.
  • [ ] Emit the versions.yml file.
  • [ ] Follow the naming conventions.
  • [ ] Follow the parameters requirements.
  • [ ] Follow the input/output options guidelines.
  • [ ] Add a resource label
  • [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [ ] nf-core modules test <MODULE> --profile docker
      • [ ] nf-core modules test <MODULE> --profile singularity
      • [ ] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

mahesh-panchal avatar Mar 25 '25 09:03 mahesh-panchal

It's a downstream process test that's failing, and the process test fails even without the changes here.

mahesh-panchal avatar Mar 25 '25 09:03 mahesh-panchal