Updated gatk4mergevcfs to pass nf-core test

Open scorreard opened this issue 9 months ago • 1 comments

PR checklist

Closes #7902

It seems that empty .gz files generated by simply touch .gz break the snapshot functionality of nf-test by causing an EOFException because the files are not actually compressed.

A fix is to replace the touch command with echo "" | gzip > .gz

Mar 24 '25 14:03 scorreard

@SPPearce yes there is a stub test now :)

Jun 02 '25 11:06 famosab

Failure related to #8241

Aug 11 '25 11:08 famosab