Add ontologies to msa modules

[mirpedrol]

Add ontologies to:

• [x] clustalo/align
• [x] clustalo/guidetree
• [x] famsa/align
• [x] famsa/guidetree
• [x] foldmason/easymsa
• [x] kalign/align
• [x] learnmsa/align
• [x] mafft/align
• [x] mafft/guidetree
• [x] magus/align
• [x] magus/guidetree
• [x] mtmalign/align
• [x] muscle5/super5
• [x] tcoffee/align
• [x] tcoffee/alncompare
• [x] tcoffee/irmsd
• [x] tcoffee/tcs