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gatk4/mutect2

Open jen-reeve opened this issue 9 months ago • 0 comments

Description of the bug Per this slack thread it seems that empty .gz files generated by simply touch .gz break the snapshot functionality of nf-test by causing an EOFException because the files are not actually compressed.

Per this comment a fix is to replace the touch command with echo "" | gzip > .gz.

jen-reeve avatar Mar 23 '25 23:03 jen-reeve