new module: qdnaseq/run

[lbeltrame]

Is there an existing module for this?

• [X] I have searched for the existing module

Is there an open PR for this?

• [X] I have searched for existing PRs

Is there an open issue for this?

• [X] I have searched for existing issues

Further Information

Integrate the venerable (but still widely used) QDNAseq in nf-core. This is important to add more tools to handle shallow whole-genome sequencing (sWGS). We already have a prototype working for one of our pipelines so it should be (hopefully) relatively straightforward to adjust for nf-core.

(I plan on working on this during the Barcelona hackathon; I can't find the instructions anymore so I don't remember if I should add it to Projects or not)

Are you going to work on this?

• [X] If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

[lbeltrame]

@SaraPotente

[github-actions[bot]]

This is a reminder that you assigned yourself to this issue to create a new module / new subworkflow. Please remove yourself from the Assignees if you do not plan to work on this anymore.