nf-core/modules/transdecoder/longorf docker image schema is not updated

[mosotelo]

Have you checked the docs?

• [X] nf-core website: troubleshooting
• [X] nf-core modules documentation

Description of the bug

An error related to docker raises when running the transdecoder_longorf module saying that the docker images with format v1 are no longer supported, and recommending to suggest the author to upgrade the image schema version to v2.

Command used and terminal output

# Command run:
$ nextflow run main.nf -resume -profile docker --input assets/samplesheet_test.csv --outdir ../test_results/

# Error output:
WARN: Undocumented setting `docker.userEmulation` is not supported any more - please remove it from your config
ERROR ~ Error executing process > 'NFCORE_TRANSCRIPTASSEMBLER:TRANSCRIPTASSEMBLER:TRANSDECODER_LONGORF (synthetic_dataset_T1)'

Caused by:
  Process `NFCORE_TRANSCRIPTASSEMBLER:TRANSCRIPTASSEMBLER:TRANSDECODER_LONGORF (synthetic_dataset_T1)` terminated with an error exit status (125)


Command executed:

  TransDecoder.LongOrfs \
       \
      -O synthetic_dataset_T1 \
      -t \
      synthetic_dataset_T1.fa.gz
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_TRANSCRIPTASSEMBLER:TRANSCRIPTASSEMBLER:TRANSDECODER_LONGORF":
      transdecoder: $(echo $(TransDecoder.LongOrfs --version) | sed -e "s/TransDecoder.LongOrfs //g")
  END_VERSIONS

Command exit status:
  125

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/comp-bio-aging/transdecoder:latest' locally
  latest: Pulling from comp-bio-aging/transdecoder
  docker: [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of quay.io/comp-bio-aging/transdecoder:latest to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/.
  See 'docker run --help'.

Relevant files

nextflow.log

System information

• Nextflow version 24.04.2
• Ubuntu 24.04 (LTS)
• Docker version 26.1.4, build 5650f9b
• Hardware: Desktop