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Add module `muse/sump`

Open famosab opened this issue 1 year ago • 1 comments

PR checklist

Closes #5621

  • [ ] This comment contains a description of changes (with reason).
  • [x] If you've fixed a bug or added code that should be tested, add tests!
  • [x] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [x] If necessary, include test data in your PR.
  • [x] Remove all TODO statements.
  • [x] Emit the versions.yml file.
  • [x] Follow the naming conventions.
  • [ ] Follow the parameters requirements.
  • [ ] Follow the input/output options guidelines.
  • [x] Add a resource label
  • [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [x] nf-core modules test <MODULE> --profile docker
      • [ ] nf-core modules test <MODULE> --profile singularity
      • [ ] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

famosab avatar May 17 '24 14:05 famosab

I would rather we fix https://bioconda.github.io/recipes/muse/README.html And update it to use the latest versions in https://github.com/wwylab/MuSE

maxulysse avatar May 17 '24 14:05 maxulysse

I opened a PR: https://github.com/bioconda/bioconda-recipes/pull/47957

famosab avatar May 21 '24 07:05 famosab