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Add util for extracting ribosomal transcripts

Open rannick opened this issue 1 year ago • 1 comments

Module to extract ribosomal RNA from gtf file

PR checklist

  • [x] This comment contains a description of changes (with reason).
  • [x] If you've fixed a bug or added code that should be tested, add tests!
  • [x] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [x] If necessary, include test data in your PR.
  • [x] Remove all TODO statements.
  • [x] Emit the versions.yml file.
  • [x] Follow the naming conventions.
  • [x] Follow the parameters requirements.
  • [x] Follow the input/output options guidelines.
  • [x] Add a resource label
  • [x] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [x] nf-core modules test <MODULE> --profile docker
      • [x] nf-core modules test <MODULE> --profile singularity
      • [x] nf-core modules test <MODULE> --profile conda

rannick avatar Apr 15 '24 07:04 rannick

@mashehu you have a point. I will check and see if it is simple enough

rannick avatar Apr 15 '24 09:04 rannick