[FEATURE] about nf-core modules that runs a template script

[suzannejin]

Is your feature request related to a problem? Please describe

For current nf-core modules. We store a script inside the path modules/nf-core/module_name/templates. If one wants to run a process with this script, some implementations do for example:

script:
template "template_name.py"

Describe the solution you'd like

I wonder why don’t we just do:

script:
template_name.py $input --arg1 $arg1 --ext.args

Is this not recommended? Why? Maybe some more information about how to do this properly?

Describe alternatives you've considered

No response

Additional context

No response