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New module: biscot

Open itrujnara opened this issue 1 year ago • 3 comments

PR checklist

Closes #2577

  • [x] Added a module to run BiSCoT
  • [ ] If you've fixed a bug or added code that should be tested, add tests! Not added - could not find test data
  • [x] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR. Not found
  • [x] Remove all TODO statements.
  • [x] Emit the versions.yml file.
  • [x] Follow the naming conventions.
  • [x] Follow the parameters requirements.
  • [x] Follow the input/output options guidelines.
  • [x] Add a resource label
  • [x] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky: Not tested yet

itrujnara avatar Mar 20 '24 15:03 itrujnara

Note: I could not create correct tests for this module, as I could not find any publicly available and open full set of test data. If you have such data, please mention this here.

itrujnara avatar Mar 20 '24 15:03 itrujnara

Could you ask the tool developers if they have some example data they can make publish?

SPPearce avatar May 08 '24 13:05 SPPearce

Also note that we can use stub tests if necessary to include here, if you've tested it locally.

SPPearce avatar May 12 '24 13:05 SPPearce

@itrujnara Are you still working on this module? :)

famosab avatar Mar 11 '25 13:03 famosab

@famosab I don't have any test data and I couldn't contact the person who proposed the module, so I have no intention of continuing work on this for now.

itrujnara avatar Mar 11 '25 14:03 itrujnara