Dorothea/differentialabundance

[Bisho2122]

PR checklist

Closes #3085

• [ ] This comment contains a description of changes (with reason).
• [ ] If you've fixed a bug or added code that should be tested, add tests!
• [X] If you've added a new tool - have you followed the module conventions in the contribution docs
• [ ] If necessary, include test data in your PR.
• [X] Remove all TODO statements.
• [X] Emit the versions.yml file.
• [X] Follow the naming conventions.
• [] Follow the parameters requirements.
• [X] Follow the input/output options guidelines.
• [ ] Add a resource label
• [X] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • [ ] nf-core modules test <MODULE> --profile docker
    • [ ] nf-core modules test <MODULE> --profile singularity
    • [ ] nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

[Bisho2122]

@pinin4fjords, I'll add the nf-tests and rest of other tests tomorrow. Let me know if you need me to add a few lines in the differentialabundance workflow. Till then, if you have any comments on the files, let me know.

[SPPearce]

@Bisho2122 , do you need any help with this?

[famosab]

@pinin4fjords @Bisho2122 Are you still on this or can we close the PR for now? :)

[pinin4fjords]

Let's close for now, and reopen if work resumes