Newmodule verkko 3

[scorreard]

This new module was created for Verkko

It only includes the option to use PacBio reads.

To be able to use ONT (nano-ore) reads, we have to wait for the release of their next version as an issue was addressed (See https://github.com/marbl/verkko/issues/185 for details)

PR checklist

• [ ] This comment contains a description of changes (with reason).
• [ ] If you've fixed a bug or added code that should be tested, add tests!
• [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
• [ ] If necessary, include test data in your PR.
• [ ] Remove all TODO statements.
• [ ] Emit the versions.yml file.
• [ ] Follow the naming conventions.
• [ ] Follow the parameters requirements.
• [ ] Follow the input/output options guidelines.
• [ ] Add a resource label
• [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • [ ] PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
  • [ ] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
  • [ ] PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

[sateeshperi]

also could you explore creating nf-tests for this module docs: https://nf-co.re/docs/contributing/modules#migrating-from-pytest-to-nf-test

[scorreard]

Closing this PR without merging as a lot of changes were made to module creation and nf-test, I think it would be better to strat from scratch