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verified publisher icon nf-core

new module: sequenzautils/seqzbinning

Open kaurravneet4123 opened this issue 4 years ago • 4 comments

Sequenza is a tool for copy number variation analysis. Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package

The program- seqz_binning- perform the binning of the seqz file to reduce file size and memory requirement for the analysis.

https://anaconda.org/bioconda/sequenza-utils

I think it would be good to have a module for sequenzautils/seqzbinning

This module does not exist yet with the nf-core modules list command There is no open pull request for this module There is no open issue for this module I'm planning to work on this module, I added myself to the Assignees to work on this module

kaurravneet4123 avatar Apr 05 '21 17:04 kaurravneet4123

Hey great work here. Any plan to include support for the full Sequenza in nf-core? Thanks

caravagn avatar Jun 14 '22 21:06 caravagn

Thanks. No immediate plans yet but hopefully in the coming future.

kaurravneet4123 avatar Jun 14 '22 21:06 kaurravneet4123

Oh I see, I think my lab, especially @nicola-calonaci, might contribute this module then.

caravagn avatar Jun 14 '22 22:06 caravagn

that would be a great contribution! Thanks.

kaurravneet4123 avatar Jun 15 '22 11:06 kaurravneet4123